Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function (duf4974) | CK234_01926 | Not Available | Negative | 2538666 - 2539652 | 38650.5 |
| ecf rna polymerase sigma-e factor | CK234_01927 | Not Available | Negative | 2539782 - 2540363 | 22722.7 |
| putative abc transporter atp-binding protein, yhes-like | CK234_01928 | Not Available | Negative | 2540403 - 2542037 | 61991.8 |
| aspartate/alanine antiporter | CK234_01929 | Not Available | Negative | 2542153 - 2543823 | 60199.9 |
| methylmalonyl-coa mutase small subunit | CK234_01930 | Not Available | Positive | 2544109 - 2546019 | 70522.5 |
| methylmalonyl-coa mutase large subunit | CK234_01931 | Not Available | Positive | 2546029 - 2548179 | 79111.7 |
| starch-binding associating with outer membrane | CK234_01932 | Not Available | Negative | 2548502 - 2549992 | 55858.7 |
| tonb-linked outer membrane protein, susc/raga family | CK234_01933 | Not Available | Negative | 2550006 - 2553251 | 119682.0 |
| protein of unknown function (duf1232) | CK234_01934 | Not Available | Negative | 2553691 - 2554053 | 13960.1 |
| outer membrane protein beta-barrel family protein | CK234_01935 | Not Available | Negative | 2554198 - 2556507 | 87893.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

