Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CK234_01916 | Not Available | Negative | 2518397 - 2518552 | 5827.96 |
| polyphosphate kinase | CK234_01917 | Not Available | Negative | 2518782 - 2520836 | 80560.6 |
| phosphoesterase | CK234_01918 | Not Available | Positive | 2520894 - 2521391 | 18707.5 |
| dtdp-glucose 4,6-dehydratase 2 | CK234_01919 | Not Available | Positive | 2521440 - 2522579 | 43738.0 |
| tonb-linked outer membrane protein, susc/raga family | CK234_01920 | Not Available | Positive | 2523062 - 2526145 | 114696.0 |
| susd family protein | CK234_01921 | Not Available | Positive | 2526158 - 2527975 | 68245.8 |
| beta-galactosidase | CK234_01922 | Not Available | Negative | 2528162 - 2531389 | 122423.0 |
| putative glucosidase, ygjk precursor-like | CK234_01923 | Not Available | Negative | 2531448 - 2533517 | 78010.4 |
| susd family protein | CK234_01924 | Not Available | Negative | 2533549 - 2535084 | 58946.4 |
| tonb-linked outer membrane protein, susc/raga family | CK234_01925 | Not Available | Negative | 2535105 - 2538608 | 129931.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

