Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative atp-dependent clp protease adapter protein, clps-like | CK234_01476 | Not Available | Negative | 1955878 - 1956201 | 12596.2 |
| pyridoxamine 5'-phosphate oxidase like protein | CK234_01477 | Not Available | Negative | 1956415 - 1956822 | 15273.3 |
| ysirk-targeted surface antigen transcriptional regulator | CK234_01478 | Not Available | Negative | 1956896 - 1957711 | 31074.5 |
| hypothetical protein | CK234_01479 | Not Available | Negative | 1957720 - 1958406 | 25460.4 |
| hypothetical protein | CK234_01480 | Not Available | Positive | 1958566 - 1959261 | 26719.6 |
| putative alpha-1,2-mannosidase | CK234_01481 | Not Available | Positive | 1959355 - 1961577 | 83529.0 |
| putative ecf rna polymerase sigma factor, sigw-like | CK234_01482 | Not Available | Positive | 1961782 - 1962357 | 22518.4 |
| protein of unknown function (duf4974) | CK234_01483 | Not Available | Positive | 1962386 - 1963378 | 38023.8 |
| putative alpha-1,2-mannosidase | CK234_01484 | Not Available | Positive | 1963396 - 1965678 | 86472.6 |
| putative alpha-1,2-mannosidase | CK234_01485 | Not Available | Positive | 1965708 - 1968020 | 87838.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

