Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crispr-associated protein cas8c/csd1, subtype i-c/dvulg | CK234_01286 | Not Available | Positive | 1703023 - 1704738 | 65100.2 |
| crispr-associated protein cas7/csd2, subtype i-c/dvulg | CK234_01287 | Not Available | Positive | 1704758 - 1705642 | 32507.9 |
| crispr-associated protein cas4 | CK234_01288 | Not Available | Positive | 1705652 - 1706317 | 25838.0 |
| cas1-like crispr-associated endonuclease | CK234_01289 | Not Available | Positive | 1706314 - 1707336 | 38708.3 |
| cas2-like crispr-associated endoribonuclease | CK234_01290 | Not Available | Positive | 1707346 - 1707636 | 11015.4 |
| pf13808-domain containing protein, associated with dde transposase | CK234_01291 | Not Available | Positive | 1708787 - 1709176 | 15010.3 |
| transposase dde domain protein | CK234_01292 | Not Available | Positive | 1709180 - 1709509 | 12423.9 |
| ferredoxin | CK234_01293 | Not Available | Negative | 1710322 - 1710489 | 5717.65 |
| putative lipoprotein, ybbd precursor-like | CK234_01294 | Not Available | Negative | 1710592 - 1713585 | 112196.0 |
| putative trifunctional nucleotide phosphoesterase protein, yfkn precursor-like | CK234_01295 | Not Available | Negative | 1713631 - 1714473 | 31282.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

