Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-galactosidase | CK234_01246 | Not Available | Negative | 1643599 - 1646046 | 92733.3 |
| susd family protein | CK234_01247 | Not Available | Negative | 1646145 - 1647686 | 59338.3 |
| tonb-linked outer membrane protein, susc/raga family | CK234_01248 | Not Available | Negative | 1647700 - 1651053 | 124284.0 |
| fecr protein | CK234_01249 | Not Available | Negative | 1651206 - 1652141 | 36546.9 |
| ecf rna polymerase sigma-e factor | CK234_01250 | Not Available | Negative | 1652196 - 1652786 | 23832.7 |
| Trna-met | Not Available | Not Available | Positive | 1653122 - 1653197 | Not Available |
| putative hth-type transcriptional regulator, qacr-like | CK234_01252 | Not Available | Positive | 1653429 - 1654028 | 22662.3 |
| putative 3-oxoacyl-(acyl-carrier-protein) reductase, fabg-like | CK234_01253 | Not Available | Positive | 1654060 - 1654806 | 25964.4 |
| ribosomal large subunit pseudouridine synthase d | CK234_01254 | Not Available | Positive | 1654808 - 1655479 | 25519.9 |
| hypothetical protein | CK234_01255 | Not Available | Negative | 1655544 - 1655849 | 10828.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

