Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophan synthase alpha chain | CK234_01176 | Not Available | Negative | 1557325 - 1558101 | 28989.2 |
| n-(5'-phosphoribosyl)anthranilate isomerase | CK234_01177 | Not Available | Negative | 1558098 - 1558715 | 22880.5 |
| indole-3-glycerol phosphate synthase | CK234_01178 | Not Available | Negative | 1558728 - 1559516 | 29292.5 |
| anthranilate phosphoribosyltransferase 2 | CK234_01179 | Not Available | Negative | 1559555 - 1560550 | 36472.1 |
| aminodeoxychorismate synthase component 2 | CK234_01180 | Not Available | Negative | 1560572 - 1561162 | 21686.1 |
| anthranilate synthase component 1 | CK234_01181 | Not Available | Negative | 1561175 - 1562575 | 52825.4 |
| tryptophan synthase beta chain | CK234_01182 | Not Available | Negative | 1562636 - 1563835 | 43987.0 |
| ytxh-like protein | CK234_01183 | Not Available | Negative | 1564086 - 1564346 | 9298.01 |
| short repeat of unknown function (duf308) | CK234_01184 | Not Available | Positive | 1564836 - 1565393 | 19966.5 |
| protein of unknown function (duf4891) | CK234_01185 | Not Available | Positive | 1565404 - 1565802 | 14987.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

