Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function (duf1016) | CK234_01106 | Not Available | Positive | 1458274 - 1459404 | 44049.9 |
| type i restriction modification dna specificity domain protein | CK234_01107 | Not Available | Positive | 1459450 - 1460760 | 48976.0 |
| putative tyrosine recombinase, xerc-like | CK234_01108 | Not Available | Positive | 1461237 - 1462043 | 31541.4 |
| ecoki-like type i restriction enzyme specificity protein | CK234_01109 | Not Available | Negative | 1462074 - 1463429 | 51264.7 |
| hypothetical protein | CK234_01110 | Not Available | Negative | 1464170 - 1464373 | 7959.79 |
| fimbrillin-like protein | CK234_01111 | Not Available | Positive | 1465377 - 1468211 | 98113.0 |
| pqqd-like coenzyme pqq synthesis protein | CK234_01112 | Not Available | Positive | 1468324 - 1468593 | 10032.2 |
| putative nucleotidyltransferase | CK234_01113 | Not Available | Positive | 1468631 - 1469716 | 41168.1 |
| putative lipid a export atp-binding/permease protein, msba-like | CK234_01114 | Not Available | Positive | 1469724 - 1471376 | 61673.2 |
| hypothetical protein | CK234_01115 | Not Available | Positive | 1471360 - 1472274 | 33750.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

