Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | CL10T00C06 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susd and ragb-like outer membrane lipoprotein | CK234_00976 | Not Available | Negative | 1295448 - 1297061 | 60320.1 |
| tonb-linked outer membrane protein, susc/raga family | CK234_00977 | Not Available | Negative | 1297080 - 1300496 | 125439.0 |
| fecr protein | CK234_00978 | Not Available | Negative | 1300648 - 1301574 | 35809.0 |
| phosphoglycerate kinase | CK234_00979 | Not Available | Positive | 1301801 - 1303051 | 43903.7 |
| hypothetical protein | CK234_00980 | Not Available | Negative | 1303126 - 1304340 | 45661.3 |
| 4-carboxymuconolactone decarboxylase | CK234_00981 | Not Available | Negative | 1304475 - 1305302 | 30968.7 |
| beta-hexosaminidase | Not Available | Not Available | Negative | 1305536 - 1307959 | 91030.5 |
| protein of unknown function (duf1624) | CK234_00983 | Not Available | Positive | 1308160 - 1309251 | 40470.6 |
| rna polymerase sigma-70 factor | CK234_00984 | Not Available | Positive | 1309276 - 1309836 | 21971.5 |
| outer membrane protein beta-barrel domain protein | CK234_00985 | Not Available | Negative | 1309895 - 1311250 | 48858.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

