Bacteroides fragilis str. DCMOUH0042B

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. DCMOUH0042B is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is classified as an anaerobe. This strain thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions commonly found in the human body, which is its natural habitat. As a chemoorganotroph, Bacteroides fragilis str. DCMOUH0042B metabolizes organic compounds to derive energy, playing a crucial role in the degradation of complex carbohydrates within the host-associated environment. The presence of Bacteroides fragilis species in the gut microbiota is essential for maintaining intestinal health, particularly in the degradation of dietary fibers and other organic materials that are not readily digestible by the host. This metabolic capability may contribute to the overall balance of microbial communities in the gastrointestinal tract, influencing nutrient absorption and host metabolism. Furthermore, the unique anaerobic nature of this strain suggests adaptations that allow it to thrive in low-oxygen environments, which is characteristic of the gut ecosystem. Understanding the specific roles and interactions of Bacteroides fragilis str. DCMOUH0042B within its ecological niche could provide insights into its contributions to host health and the potential impacts of dysbiosis in gut microbiota.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainDCMOUH0042B

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. DCMOUH0042B
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityHuman

Genome Summary

Bacteroides fragilis strain DCMOUH0042B chromosome, complete

Gene Summary

Adenine Count

1453684 bp

Thymine Count

1458792 bp

Guanine Count

1112819 bp

Cytosine Count

1115962 bp

Genome Length

5141257 bp

Protein-coding Genes

4090 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sh3 domain-containing proteinHR50_RS07020Not AvailableNegative1638531 - 1641326105862.0
hsp70 family proteinHR50_RS07025Not AvailableNegative1641354 - 164294358632.2
nucleotide exchange factor grpeHR50_RS07030Not AvailableNegative1642983 - 164383132860.4
is1380-like element is613 family transposaseHR50_RS07035Not AvailablePositive1644024 - 164531049574.1
6-bladed beta-propellerHR50_RS07040Not AvailablePositive1646488 - 164764843851.5
ump kinaseHR50_RS07050Not AvailableNegative1647895 - 164860525628.3
mate family efflux transporterHR50_RS07055Not AvailableNegative1648654 - 164996748849.9
family 16 glycosylhydrolaseHR50_RS07065Not AvailablePositive1650167 - 165148950638.1
tetratricopeptide repeat proteinHR50_RS07070Not AvailablePositive1651604 - 165228726252.6
zinc-dependent metalloproteinase lipoproteinHR50_RS07075Not AvailableNegative1652311 - 165362148881.8

Displaying genes 1291 – 1300 of 4189 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Ad pathologiesCausesPMC10482867
DiarrheaCausesPMC13367044
ColitisCausesPMC13367044
Tumor formationCausesPMC13367044
Anaerobic bacteremiaCausesPMC5704556
Intraabdominal abscessesCausesPMC5704556
Colorectal cancerCausesPMC11704243
CrcCausesPMC11704243
BacteremiaCausesPMC8554563
SepticemiaCausesPMC8554563

Displaying health effects 1 – 10 of 19 in total