Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pasteurellales
Family
Pasteurellaceae
Genus
Rodentibacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pasteurellales |
| Family | Pasteurellaceae |
| Genus | Rodentibacter |
| Species | Rodentibacter pneumotropicus |
| Strain | Ppn95 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
677148 bp
Thymine Count
676482 bp
Guanine Count
453375 bp
Cytosine Count
451890 bp
Genome Length
2258895 bp
Protein-coding Genes
2068 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | D3M83_02665 | Not Available | Positive | 530587 - 531168 | 22082.6 |
| trna (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-o)- methyltransferase trml | D3M83_02670 | Not Available | Positive | 531177 - 531656 | 18202.9 |
| xylulokinase | D3M83_02675 | Not Available | Negative | 531691 - 533172 | 54644.6 |
| xylose isomerase | D3M83_02680 | Not Available | Negative | 533228 - 534547 | 49879.0 |
| d-xylose abc transporter substrate-binding protein | D3M83_02685 | Not Available | Positive | 534786 - 535784 | 35946.2 |
| d-xylose abc transporter atp-binding protein | D3M83_02690 | Not Available | Positive | 535830 - 537341 | 55727.3 |
| sugar abc transporter permease | D3M83_02695 | Not Available | Positive | 537345 - 538472 | 39743.0 |
| helix-turn-helix domain-containing protein | D3M83_02700 | Not Available | Positive | 538572 - 539741 | 44913.6 |
| dna-binding transcriptional repressor deor | D3M83_02705 | Not Available | Negative | 539793 - 540530 | 27275.2 |
| deoxyribose-phosphate aldolase | D3M83_02710 | Not Available | Negative | 540547 - 541221 | 24040.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
