Rodentibacter pneumotropicus str. Ppn95

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter pneumotropicus str. Ppn95 is a rod-shaped bacterium characterized by its single replicon genome, which is represented by the accession number QXNM00000000.1. This organism's structural morphology is indicative of its classification within the broader context of rod-shaped bacteria, a common shape that often influences the microbe's dynamics in various environments. The presence of a single replicon suggests a streamlined genomic architecture that may reflect adaptations to specific ecological niches or metabolic pathways. The genomic information available for Rodentibacter pneumotropicus str. Ppn95 provides a foundation for understanding its genetic capabilities and potential functions. This strain may exhibit unique traits in terms of metabolic processes, interactions with host organisms, or environmental resilience, though specific metabolic pathways or ecological roles have not been elaborated in the provided data. Thus, while the structural and genomic characteristics of Rodentibacter pneumotropicus str. Ppn95 are established, further research could reveal insights into its ecological significance, particularly in relation to host-microbe interactions or its role in the microbiome of rodent hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter pneumotropicus
StrainPpn95

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter pneumotropicus strain Ppn95 contig_188, whole genome

Gene Summary

Adenine Count

677148 bp

Thymine Count

676482 bp

Guanine Count

453375 bp

Cytosine Count

451890 bp

Genome Length

2258895 bp

Protein-coding Genes

2068 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s rrna (guanine(966)-n(2))-methyltransferase rsmdD3M83_02665Not AvailablePositive530587 - 53116822082.6
trna (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-o)- methyltransferase trmlD3M83_02670Not AvailablePositive531177 - 53165618202.9
xylulokinaseD3M83_02675Not AvailableNegative531691 - 53317254644.6
xylose isomeraseD3M83_02680Not AvailableNegative533228 - 53454749879.0
d-xylose abc transporter substrate-binding proteinD3M83_02685Not AvailablePositive534786 - 53578435946.2
d-xylose abc transporter atp-binding proteinD3M83_02690Not AvailablePositive535830 - 53734155727.3
sugar abc transporter permeaseD3M83_02695Not AvailablePositive537345 - 53847239743.0
helix-turn-helix domain-containing proteinD3M83_02700Not AvailablePositive538572 - 53974144913.6
dna-binding transcriptional repressor deorD3M83_02705Not AvailableNegative539793 - 54053027275.2
deoxyribose-phosphate aldolaseD3M83_02710Not AvailableNegative540547 - 54122124040.1

Displaying genes 551 – 560 of 2140 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Rodent abscessCausesPMC6814026

Displaying health effects 1 – 1 of 1 in total