Rodentibacter pneumotropicus str. FD1189

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter pneumotropicus str. FD1189 is a rod-shaped bacterium characterized by a single replicon in its genome, which can be referenced through the accession number QXNF00000000.1. This structural trait suggests a streamlined genomic architecture that may facilitate efficient replication and maintenance of its genetic material. The rod shape of R. pneumotropicus str. FD1189 is indicative of its potential adaptability to various environments, allowing it to occupy specific ecological niches. The presence of a single replicon may also imply a potentially simpler regulatory mechanism for gene expression and replication compared to organisms with multiple replicons. Understanding the genomic configuration and morphology of R. pneumotropicus str. FD1189 can provide insights into its metabolic capabilities and ecological roles. The morphological and genomic traits of this strain suggest that it may play a specialized role in its environment, potentially interacting with other microbial communities or influencing host organisms in ways not yet fully understood. Further research may reveal additional functional implications of these traits, contributing to our overall understanding of the ecological dynamics in which Rodentibacter pneumotropicus str. FD1189 is involved.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter pneumotropicus
StrainFD1189

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter pneumotropicus strain FD1189 contig_126, whole

Gene Summary

Adenine Count

676242 bp

Thymine Count

688135 bp

Guanine Count

457899 bp

Cytosine Count

451011 bp

Genome Length

2273287 bp

Protein-coding Genes

2009 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseD3M74_03515Not AvailableNegative736479 - 73742334601.3
lipoprotein signal peptidaseD3M74_03520Not AvailableNegative737420 - 73793819559.9
isoleucine--trna ligaseD3M74_03525Not AvailableNegative738005 - 740830106140.0
bifunctional riboflavin kinase/fad synthetaseD3M74_03530Not AvailableNegative740846 - 74179635926.7
murein biosynthesis integral membrane protein murjD3M74_03535Not AvailableNegative741831 - 74340557620.1
hypothetical proteinD3M74_03540Not AvailablePositive743317 - 74359510818.7
30s ribosomal protein s20D3M74_03545Not AvailablePositive743672 - 7439359636.91
atp-dependent rna helicase srmbD3M74_03550Not AvailableNegative744169 - 74549150044.2
trna1(val) (adenine(37)-n6)-methyltransferaseD3M74_03555Not AvailablePositive745592 - 74629026571.1
nicotinamide riboside transporter pnucD3M74_03560Not AvailableNegative746358 - 74703225758.8

Displaying genes 721 – 730 of 2095 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Rodent abscessCausesPMC6814026

Displaying health effects 1 – 1 of 1 in total