Rodentibacter pneumotropicus str. FD1189

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter pneumotropicus str. FD1189 is a rod-shaped bacterium characterized by a single replicon in its genome, which can be referenced through the accession number QXNF00000000.1. This structural trait suggests a streamlined genomic architecture that may facilitate efficient replication and maintenance of its genetic material. The rod shape of R. pneumotropicus str. FD1189 is indicative of its potential adaptability to various environments, allowing it to occupy specific ecological niches. The presence of a single replicon may also imply a potentially simpler regulatory mechanism for gene expression and replication compared to organisms with multiple replicons. Understanding the genomic configuration and morphology of R. pneumotropicus str. FD1189 can provide insights into its metabolic capabilities and ecological roles. The morphological and genomic traits of this strain suggest that it may play a specialized role in its environment, potentially interacting with other microbial communities or influencing host organisms in ways not yet fully understood. Further research may reveal additional functional implications of these traits, contributing to our overall understanding of the ecological dynamics in which Rodentibacter pneumotropicus str. FD1189 is involved.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter pneumotropicus
StrainFD1189

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter pneumotropicus strain FD1189 contig_126, whole

Gene Summary

Adenine Count

676242 bp

Thymine Count

688135 bp

Guanine Count

457899 bp

Cytosine Count

451011 bp

Genome Length

2273287 bp

Protein-coding Genes

2009 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional 23s rrna (guanine(2069)-n(7))-methyltransferase rlmk/23s rrna (guanine(2445)-n(2))-methyltransferase rlmlD3M74_08310Not AvailableNegative1706077 - 170821280900.6
zinc abc transporter substrate-binding protein znuaD3M74_08315Not AvailableNegative1708333 - 170930135579.2
trna cyclic n6-threonylcarbamoyladenosine(37) synthase tcdaD3M74_08320Not AvailableNegative1709479 - 171025828254.6
murein transglycosylase aD3M74_08325Not AvailableNegative1710243 - 171136440815.7
Trna-metNot AvailableNot AvailablePositive1711558 - 1711634Not Available
23s rrna (cytidine(2498)-2'-o)-methyltransferase rlmmD3M74_08335Not AvailableNegative1711724 - 171281241742.8
transcriptional regulator gcvaD3M74_08340Not AvailableNegative1712805 - 171369834389.5
nucleotidyl transferase abieii/abigii toxin family proteinD3M74_08345Not AvailableNegative1713978 - 171495537005.7
hypothetical proteinD3M74_08350Not AvailableNegative1714928 - 171539217567.7
is1595 family transposaseD3M74_08355Not AvailablePositive1715742 - 171677940674.2

Displaying genes 1601 – 1610 of 2095 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Rodent abscessCausesPMC6814026

Displaying health effects 1 – 1 of 1 in total