Rodentibacter pneumotropicus str. 394_12

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter pneumotropicus str. 394_12 is a rod-shaped bacterium characterized by a single replicon in its genome. The genomic data for this strain is cataloged under the accession QXND00000000.1, allowing for further genomic analysis and study. The rod shape of this microbe suggests a potential adaptation to its ecological niche, facilitating motility and interaction with its environment. Although specific details regarding its ecological role or pathogenicity are not provided, the structural characteristics of Rodentibacter pneumotropicus str. 394_12 may influence its interactions within microbial communities, particularly in environments associated with rodent hosts. Understanding the genomic framework and morphology of this strain could provide insights into its biological functions and ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter pneumotropicus
Strain394_12

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter pneumotropicus strain 394_12 contig_152, whole

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribose abc transporter substrate-binding protein rbsbD3M72_10045Not AvailableNegative2087838 - 208870429903.8
ribose abc transporter permeaseD3M72_10055Not AvailableNegative2088808 - 208977934047.9
ribose abc transporter atp-binding protein rbsaD3M72_10060Not AvailableNegative2089791 - 209127854596.4
d-ribose pyranaseD3M72_10065Not AvailableNegative2091291 - 209171015284.7
arginine abc transporter substrate-binding proteinD3M72_10070Not AvailablePositive2091939 - 209266126697.1
putrescine-ornithine antiporterD3M72_10075Not AvailableNegative2092803 - 209412246938.9
ornithine decarboxylase spefD3M72_10080Not AvailableNegative2094183 - 209634581764.5
duf2618 domain-containing proteinD3M72_10085Not AvailableNegative2096574 - 20966784111.22
type vi secretion system contractile sheath small subunitD3M72_10090Not AvailablePositive2096875 - 209737218457.1
type vi secretion system contractile sheath large subunitD3M72_10095Not AvailablePositive2097383 - 209887056301.7

Displaying genes 1951 – 1960 of 2130 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Result columns

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Health Effects

Health ConditionRelationReference
Rodent abscessCausesPMC6814026

Displaying health effects 1 – 1 of 1 in total