Histophilus somni str. UOC-EPH-KLM-08

Gram-negativeRodAerobe; facultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Histophilus

Description

Histophilus somni str. UOC-EPH-KLM-08 is a Gram-negative, rod-shaped bacterium that demonstrates both aerobic and facultative anaerobic growth capabilities. This microbe thrives optimally at a temperature of 35.0°C, suggesting a preference for conditions typically found in warm-blooded hosts. Its habitat is primarily host-associated, indicating a close relationship with its environmental niche within living organisms. The dual oxygen requirement of H. somni str. UOC-EPH-KLM-08 allows it to adapt to varying oxygen levels within host tissues, which can be crucial for survival in different physiological environments. This flexibility may enhance its ability to colonize diverse niches within the host, reflecting its potential role in host-associated microbiomes. Given its specific growth temperature and habitat, H. somni str. UOC-EPH-KLM-08 may occupy a significant ecological role in the microbiota of its host, contributing to the complex interactions within the microbial community. Understanding the characteristics of this strain can provide insights into its potential functional roles in health and disease dynamics within host organisms, particularly in the context of microbial ecology and host interactions. Further research may elucidate its specific contributions to the host microbiome and overall host health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusHistophilus
SpeciesHistophilus somni
StrainUOC-EPH-KLM-08

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe; facultative anaerobe
Optimal temperature35
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipNot Available
Host(s)Bos taurus, Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Histophilus somni strain UOC-EPH-KLM-08 Contig_127, whole genome

Gene Summary

Adenine Count

675014 bp

Thymine Count

674744 bp

Guanine Count

393475 bp

Cytosine Count

406338 bp

Genome Length

2149571 bp

Protein-coding Genes

1787 genes

Non-Coding Genes

200 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna translocase ftskE5361_07555Not AvailableNegative1587127 - 1589835101114.0
leucine-responsive transcriptional regulator lrpE5361_07560Not AvailableNegative1589837 - 159031318055.3
dna repair protein radaE5361_07565Not AvailableNegative1590414 - 159179049584.2
inorganic triphosphataseE5361_07570Not AvailableNegative1591800 - 159284340234.2
tigr00153 family proteinE5361_07575Not AvailablePositive1592986 - 159366626089.7
inorganic phosphate transporterE5361_07580Not AvailablePositive1593693 - 159495544045.9
sh3 domain-containing proteinE5361_07585Not AvailablePositive1595060 - 159567123283.2
multifunctional cca addition/repair proteinE5361_07590Not AvailablePositive1595676 - 159692947905.1
molecular chaperone dnakE5361_07595Not AvailablePositive1597108 - 159901568479.0
molecular chaperone dnajE5361_07600Not AvailablePositive1599113 - 160023441029.0

Displaying genes 1531 – 1540 of 1987 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

462 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000198tetracenomycin CC23H20O11Chemical structure of tetracenomycin CNot available
Average472.402Da
Monoisotopic472.100561464Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 462 metabolites

Health Effects

Health ConditionRelationReference
PneumoniaCausesPMC281138
Bovine respiratory diseaseCausesPMC12473052
BrdCausesPMC12473052
Bovine respiratory disease complexCausesPMC12943494
BrdcCausesPMC12943494

Displaying health effects 1 – 5 of 5 in total