Vibrio vulnificus

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio vulnificus is a Gram-negative, rod-shaped bacterium that exhibits motility through the presence of flagella. This mesophilic organism prefers an optimal growth temperature of 20°C and is classified as a facultative anaerobe, allowing it to thrive in various oxygen conditions. V. vulnificus is heterotrophic, deriving its energy from organic compounds, and is typically found in aquatic environments, where it exists as a free-living organism. The cellular structure of V. vulnificus consists of two membranes, characteristic of Gram-negative bacteria. It possesses three replicons in its genome, which is accessible through specific genome accession numbers, indicating a complex genetic architecture. The bacterium is known to be pathogenic to humans, although specific pathogenic mechanisms and interactions with host biology are not detailed. Notably, V. vulnificus is often associated with marine environments and can be implicated in human infections through exposure to contaminated water or consumption of raw seafood. Its ability to adapt to varying environmental conditions, coupled with its pathogenic potential, underscores the importance of understanding its ecological role in aquatic ecosystems and the risks it poses to human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio vulnificus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Vibrio vulnificus
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Homo sapiens, Penaeus vannamei, Ostreidae
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityHuman

Genome Summary

Vibrio vulnificus strain R02

Gene Summary

Adenine Count

1572196 bp

Thymine Count

1573432 bp

Guanine Count

1353116 bp

Cytosine Count

1350436 bp

Genome Length

5849180 bp

Protein-coding Genes

6478 genes

Non-Coding Genes

141 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lema family proteinCRN52_00040Not AvailableNegative6955 - 754522001.5
anaerobic c4-dicarboxylate transporter dcucCRN52_00045Not AvailableNegative7750 - 911747199.6
msha biogenesis protein mshaCRN52_00050Not AvailableNegative9464 - 1001819733.8
zn-dependent proteaseCRN52_00055Not AvailableNegative10258 - 1160148174.5
tldd/pmba family proteinCRN52_00060Not AvailableNegative11601 - 1298649774.5
glycerophosphodiester phosphodiesteraseCRN52_00065Not AvailableNegative13255 - 1431340062.2
mfs transporterCRN52_00070Not AvailableNegative14564 - 1594651294.5
hypothetical proteinCRN52_00075Not AvailablePositive16147 - 163508099.88
cytolysinCRN52_00080Not AvailableNegative16391 - 1780652874.7
cytolysin secretion proteinCRN52_00085Not AvailableNegative17808 - 1835919843.2

Displaying genes 21 – 30 of 16509 in total

Metabolites

57 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da
BASm0015112Vulnibactin 2C11H11NO4Not availableNULL
Average221.212Da
Monoisotopic221.068807838Da
BASm0015147VulnibactinC35H39N5O9Not availableNULL
Average673.723Da
Monoisotopic673.274777856Da
BASm0016546Vulnibactin 3C24H30N4O6Chemical structure of Vulnibactin 3NULL
Average470.526Da
Monoisotopic470.216534702Da

Displaying 1–10 of 57 metabolites

Health Effects

Health ConditionRelationReference
VibriosisCausesPMC10472736
PneumoniaCausesPMC12801787
Wound infectionsCausesPMC13070559
SepticemiaCausesPMC13070559
Necrotizing soft tissue infectionCausesPMC13070559
Primary septicemiaCausesPMC13070559
PeritonitisCausesPMC7146884
SepticemiaCausesPMC7146884
MyositisCausesPMC7146884
Necrotizing fasciitisCausesPMC7146884

Displaying health effects 1 – 10 of 20 in total