Vibrio harveyi

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio harveyi is a Gram-negative bacterium primarily found in marine environments, including aquaculture settings and the Changjiang estuary. This microbe is part of the Vibrio genus, which is known for its diverse ecological roles in aquatic ecosystems. As a member of the vibrio group, V. harveyi is adapted to thrive in saline conditions, which is indicative of its marine habitat. The organism exhibits typical characteristics associated with Gram-negative bacteria, including a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. These features play a role in its interactions with the surrounding environment, influencing both its survival strategies and potential roles in nutrient cycling within marine ecosystems. Vibrio harveyi is particularly significant in aquaculture, where its presence may have implications for the health of cultured marine species. The bacterium's adaptability to varying environmental conditions underscores its ecological importance in estuarine and marine habitats. Furthermore, studying V. harveyi can provide insights into the complex microbial dynamics of aquaculture systems, highlighting the interplay between microbial communities and their aquatic environments. The ecological roles of such bacteria may extend to influencing the health of marine ecosystems and the sustainability of aquaculture practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio harveyi
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Vibrio harveyi
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
Habitataquaculture; Changjiang estuary; Marine
Biotic relationshipNot Available
Host(s)Homo sapiens, Hippocampus abdominalis, Hippocampinae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio harveyi strain FDAARGOS_107 chromosome 1, complete

Gene Summary

Adenine Count

1021746 bp

Thymine Count

1026478 bp

Guanine Count

833326 bp

Cytosine Count

836809 bp

Genome Length

3718359 bp

Protein-coding Genes

3281 genes

Non-Coding Genes

155 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tatd family hydrolaseAL538_RS10840Not AvailableNegative2129145 - 212990928686.3
porphobilinogen synthaseAL538_RS10845Not AvailablePositive2130096 - 213115739117.8
gnat family n-acetyltransferaseAL538_RS10850Not AvailablePositive2131283 - 213171716495.0
dna polymerase iAL538_RS10860Not AvailablePositive2132324 - 2135116102963.0
ribosome biogenesis gtp-binding protein yiha/ysxcAL538_RS10870Not AvailableNegative2135874 - 213653324573.6
c-type cytochromeAL538_RS10875Not AvailablePositive2136693 - 213731021922.3
class i sam-dependent methyltransferaseAL538_RS10880Not AvailablePositive2138054 - 213869225003.7
der gtpase-activating protein yihiAL538_RS10885Not AvailablePositive2138692 - 213923720526.2
duf2489 domain-containing proteinAL538_RS10890Not AvailablePositive2139245 - 213973318576.7
oxygen-independent coproporphyrinogen iii oxidaseAL538_RS10895Not AvailablePositive2139919 - 214131053535.0

Displaying genes 2021 – 2030 of 3436 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034334-amino-4-deoxychorismateC10H10NO5Chemical structure of 4-amino-4-deoxychorismate133442-18-9
Average224.193Da
Monoisotopic224.056446006Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039765Burkholderiales bacterium 1_1_47Not availableNot availableNot available
BASm0040021Acidiphilium cryptum JF-5Not availableNot availableNot available
BASm0040022Acidithiobacillus ferrooxidans ATCC 23270Not availableNot availableNot available
BASm0040062Acinetobacter baumannii ATCC 17978Not availableNot availableNot available
BASm0040081Rhodococcus sp. IGTS8Not availableNot availableNot available
BASm0040220Bifidobacterium bifidum BGN4Not availableNot availableNot available

Displaying 1–10 of 11 metabolites

Health Effects

Health ConditionRelationReference
Infections in fishCausesPMC12873115
VibriosisCausesPMC13255019
Mass mortality of seahorsesCausesPMC13255019
VibriosisCausesPMC13411935
VibriosisCausesPMC8416912
GastroenteritisCausesPMC8416912
SepticaemiaCausesPMC8416912
Fish and crustacean infectionsCausesPMC9525291
Scale dropCausesPMC9769913
Muscle necrosisCausesPMC9769913

Displaying health effects 1 – 10 of 19 in total