Vibrio cholerae str. VcCHNf4

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio cholerae strain VcCHNf4 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic conditions, and it relies on organic compounds as a heterotrophic energy source. The optimal growth temperature for VcCHNf4 is approximately 20.0 °C, which suggests a preference for cooler environments, potentially influencing its ecological niche. Vibrio cholerae strains, including VcCHNf4, inhabit a variety of habitats, indicating their adaptability to diverse ecological settings. This adaptability may allow the strain to occupy various niches, such as aquatic environments where it can associate with phytoplankton or other organic matter. The ability to grow under varying oxygen levels may also facilitate its survival in fluctuating conditions, highlighting the ecological versatility of this bacterium. Given these traits, Vibrio cholerae strain VcCHNf4 may play a role in nutrient cycling in its habitat, contributing to the breakdown of organic material and influencing microbial community dynamics. Further studies could elucidate its specific interactions within its ecological context, providing insights into its functional roles in the environments it inhabits.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cholerae
StrainVcCHNf4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Vibrio cholerae str. VcCHNf4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Mollusca, Mammalia
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityHuman

Genome Summary

Vibrio cholerae strain VcCHNf4 Scaffold154, whole genome shotgun

Gene Summary

Adenine Count

1043487 bp

Thymine Count

1040744 bp

Guanine Count

926748 bp

Cytosine Count

950409 bp

Genome Length

3961443 bp

Protein-coding Genes

3564 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-glucose 4-epimerase galeD2925_00675Not AvailableNegative178925 - 17994136936.0
5-oxoprolinase subunit pxpaD2925_00680Not AvailablePositive180249 - 18098927058.3
carboxyltransferase domain-containing proteinD2925_00685Not AvailablePositive180993 - 18170326392.0
biotin-dependent carboxyltransferase family proteinD2925_00690Not AvailablePositive181790 - 18271933735.6
fad-dependent oxidoreductaseD2925_00695Not AvailableNegative182756 - 18418953263.5
nucleotide sugar dehydrogenaseD2925_00700Not AvailableNegative184298 - 18546443520.3
abc transporter permeaseD2925_00705Not AvailableNegative185854 - 18830189479.7
abc transporter atp-binding proteinD2925_00710Not AvailableNegative188298 - 18897524514.6
multifunctional acyl-coa thioesterase i/protease i/lysophospholipase l1D2925_00715Not AvailablePositive188926 - 18957323702.7
trans-2-enoyl-coa reductase family proteinD2925_00720Not AvailablePositive189663 - 19087144841.4

Displaying genes 151 – 160 of 3659 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
CholeraCausesPMC10103850
Ear infectionsCausesPMC10103850
Wound infectionsCausesPMC10103850
SepticaemiaCausesPMC10103850
Gastrointestinal infectionsCausesPMC10103850
Necrotizing fasciitisCausesPMC10103850
VibriosisCausesPMC10472736
PneumoniaCausesPMC12801787
GastroenteritisCausesPMC12801787
SinusitisCausesPMC12801787

Displaying health effects 1 – 10 of 38 in total