Yersinia intermedia

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia intermedia is a Gram-negative, rod-shaped bacterium that inhabits diverse environments, including freshwater ecosystems, marine environments, and even extreme habitats such as permafrost and Mars analog environments. This organism has been identified in various ecological niches, including lakes like Gr navatn, as well as in food sources, suggesting a versatile survival strategy that enables it to thrive in both aquatic and terrestrial settings. Yersinia intermedia's adaptability to a range of habitats highlights its potential resilience to environmental changes, which may be particularly relevant in the context of climate change and habitat alteration. The presence of this bacterium in extreme environments, such as permafrost, invites further investigation into its metabolic capabilities and potential roles in nutrient cycling within these ecosystems. Understanding Yersinia intermedia's ecological interactions could provide insights into microbial life in extreme conditions and its implications for ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia intermedia
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Yersinia intermedia
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatenvironment; food; Fresh water; lake Gr navatn; Marine; Mars analog environments; permafrost
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Mammalia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yersinia intermedia genome assembly 5139_2#5, scaffold

Gene Summary

Adenine Count

1251067 bp

Thymine Count

1249819 bp

Guanine Count

1119060 bp

Cytosine Count

1136137 bp

Genome Length

4756083 bp

Protein-coding Genes

4123 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell division topological specificity factor mineERS008476_00934A1JRC1Positive994467 - 99473610288.6
ribonuclease dERS008476_00935A8GFH0Negative994975 - 99609642421.7
long-chain-fatty-acid--coa ligaseERS008476_00936Q8ZES9Negative996213 - 99790762923.4
slp family outer membrane lipoproteinERS008476_00937P0AA92Negative998251 - 99885321991.7
family m22 nonpeptidase-like proteinERS008476_00938Q7CQE0Negative998963 - 99966124846.9
dead box family helicaseERS008476_00939P76257Negative999743 - 100165370194.8
endoribonuclease l-pspERS008476_00940P0AEB8Positive1001783 - 100212712540.9
multidrug efflux system protein mdtiERS008476_00941A1JRE5Negative1002239 - 100256811806.1
putative inner membrane proteinERS008476_00942A1JRE8Negative1002555 - 100293213564.2
n-acetylglucosamine-binding protein aERS008476_00943Not AvailablePositive1003934 - 100635791227.9

Displaying genes 921 – 930 of 26158 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

282 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da

Displaying 1–10 of 282 metabolites

Health Effects

No health effects information available for this bacterium.