Yersinia intermedia

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia intermedia is a Gram-negative, rod-shaped bacterium that inhabits diverse environments, including freshwater ecosystems, marine environments, and even extreme habitats such as permafrost and Mars analog environments. This organism has been identified in various ecological niches, including lakes like Gr navatn, as well as in food sources, suggesting a versatile survival strategy that enables it to thrive in both aquatic and terrestrial settings. Yersinia intermedia's adaptability to a range of habitats highlights its potential resilience to environmental changes, which may be particularly relevant in the context of climate change and habitat alteration. The presence of this bacterium in extreme environments, such as permafrost, invites further investigation into its metabolic capabilities and potential roles in nutrient cycling within these ecosystems. Understanding Yersinia intermedia's ecological interactions could provide insights into microbial life in extreme conditions and its implications for ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia intermedia
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Yersinia intermedia
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatenvironment; food; Fresh water; lake Gr navatn; Marine; Mars analog environments; permafrost
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Mammalia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yersinia intermedia genome assembly 5139_2#5, scaffold

Gene Summary

Adenine Count

1251067 bp

Thymine Count

1249819 bp

Guanine Count

1119060 bp

Cytosine Count

1136137 bp

Genome Length

4756083 bp

Protein-coding Genes

4123 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spovt/abrb-like proteinERS008476_02695Q05459Positive2911959 - 29121868737.39
virulence associated protein cERS008476_02696Q8ZM86Positive2912183 - 291260215481.0
6-n-hydroxylaminopurine resistance proteinERS008476_02697P32157Negative2912777 - 291345125313.1
methyl-accepting chemotaxis protein iiERS008476_02698Not AvailableNegative2913621 - 291558271457.1
superoxide dismutaseERS008476_02699P53655Negative2915904 - 291652723235.4
conserved hypothetical proteinERS008476_02700Not AvailableNegative2916713 - 291729722874.3
putative atp binding protein sugrERS008476_02701P0DV91Negative2917290 - 291866051340.0
formate dehydrogenase accessory proteinERS008476_02702A1JT32Negative2918704 - 291952829662.9
formate dehydrogenase-o%2c iron-sulfur subunitERS008476_02704P0AAJ6Positive2922952 - 292392335253.3
formate dehydrogenase-o subunit gammaERS008476_02705P0AEL2Positive2923920 - 292457025138.4

Displaying genes 2621 – 2630 of 26158 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

282 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da

Displaying 1–10 of 282 metabolites

Health Effects

No health effects information available for this bacterium.