Shigella sonnei

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella sonnei is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This species is non-motile, despite possessing flagella, and features two cellular membranes. As a facultative anaerobe, S. sonnei can grow in both aerobic and anaerobic environments, utilizing organic compounds for energy as a chemoorganotroph. Its optimal growth temperature is around 37°C, classifying it as mesophilic and indicating a preference for body temperature conditions typical of its host. S. sonnei is primarily associated with hosts, indicating its habitat is largely linked to living organisms, while also demonstrating a free-living biotic relationship. The organism possesses five replicons, which are essential for its genetic regulation and stability. The genome of Shigella sonnei has been documented through several accessions, including CXEP00000000.1 and NQBH00000000.1, among others, providing a resource for further genetic and functional studies. This genetic diversity may contribute to its adaptability and survival within host environments. Understanding the specific ecological niches occupied by S. sonnei could provide insights into its role in human health and disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella sonnei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella sonnei
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa, Pteropodidae
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella sonnei strain B7414 GCID_CREK_0085_NODE_157.ctg_1, whole

Gene Summary

Adenine Count

1301421 bp

Thymine Count

1305416 bp

Guanine Count

1346729 bp

Cytosine Count

1321909 bp

Genome Length

5290188 bp

Protein-coding Genes

4871 genes

Non-Coding Genes

238 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-2,3-diacylglucosamine diphosphataseEPS31_00915Not AvailablePositive179313 - 18003526867.6
5-(carboxyamino)imidazole ribonucleotide mutaseEPS31_00920Not AvailablePositive180153 - 18066217781.3
5-(carboxyamino)imidazole ribonucleotide synthaseEPS31_00925Not AvailablePositive180659 - 18172639481.4
carbamate kinaseEPS31_00930Not AvailableNegative181863 - 18275631689.1
duf2877 domain-containing proteinEPS31_00935Not AvailableNegative182753 - 18356829696.0
duf1116 domain-containing proteinEPS31_00940Not AvailableNegative183579 - 18483844982.6
acyl-coa synthetase fdraEPS31_00945Not AvailableNegative184848 - 18651558478.4
ureidoglycolate dehydrogenaseEPS31_00950Not AvailablePositive186832 - 18788137907.3
allantoate amidohydrolaseEPS31_00955Not AvailablePositive187903 - 18913845657.5
(s)-ureidoglycine aminohydrolaseEPS31_00960Not AvailablePositive189149 - 18993428747.1

Displaying genes 371 – 380 of 24990 in total

Pathways

16 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
ShigellosisCausesPMC2600399
ShigellosisCausesPMC5177732
Diarrheal diseaseCausesPMC5177732
ShigellosisCausesPMC6038740
ShigellosisCausesPMC2271788
ShigellosisCausesPMC5447701
Bacterial dysenteryCausesPMC5447701
DiarrheaCausesPMC8886675
DysenteryCausesPMC8886675
ShigellosisCausesPMC8886675

Displaying health effects 1 – 10 of 11 in total