Shigella sonnei str. 75/02

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella sonnei str. 75/02 is a Gram-negative, rod-shaped bacterium that typically appears as single cells or in pairs. This strain optimally grows at a temperature of 37.0°C, which corresponds with the normal human body temperature, suggesting an adaptation to a host-associated habitat. As a chemoorganotroph, it derives energy from organic compounds, reflecting its reliance on a nutrient-rich environment often found within host organisms. Additionally, S. sonnei str. 75/02 is classified as a facultative anaerobe, indicating its capability to survive in both aerobic and anaerobic conditions, which may enhance its persistence in diverse microenvironments within the host. The ability of S. sonnei to thrive in the human gastrointestinal tract, coupled with its metabolic flexibility, positions it as a notable member of the enteric microbiota. Understanding these traits can provide insights into its survival strategies and potential interactions within the host, including its response to variations in oxygen availability and nutrient composition. This adaptability may contribute to its competitive edge in colonizing the gut, underscoring the importance of host-associated environments in shaping the physiological traits of pathogenic microbes like Shigella sonnei.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella sonnei
Strain75/02

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella sonnei str. 75/02
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa, Pteropodidae
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella sonnei strain 75/02 plasmid p75-02_5, complete sequence.

Gene Summary

Adenine Count

1326 bp

Thymine Count

1417 bp

Guanine Count

1244 bp

Cytosine Count

1127 bp

Genome Length

5114 bp

Protein-coding Genes

4 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iclr family transcriptional regulatorBZ172_RS01620Not AvailableNegative314348 - 31513028931.9
nicotinamide mononucleotide deamidase-related protein yfayBZ172_RS01625Not AvailableNegative315350 - 31655244246.3
yfaz family outer membrane proteinBZ172_RS01630Not AvailableNegative316652 - 31719418577.7
nucleoside triphosphatase nudiBZ172_RS01635Not AvailablePositive317473 - 31789816361.6
lipopolysaccharide core heptose(ii)-phosphate phosphatase aisBZ172_RS01640Not AvailableNegative317937 - 31853922290.8
udp-4-amino-4-deoxy-l-arabinose aminotransferaseBZ172_RS01645Not AvailablePositive318847 - 31998641625.1
undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferaseBZ172_RS01650Not AvailablePositive319990 - 32095836341.3
bifunctional udp-4-amino-4-deoxy-l-arabinose formyltransferase/udp-glucuronic acid oxidase arnaBZ172_RS01655Not AvailablePositive320958 - 32294074277.1
4-deoxy-4-formamido-l-arabinose- phosphoundecaprenol deformylaseBZ172_RS01660Not AvailablePositive322937 - 32382733113.6
lipid iv(a) 4-amino-4-deoxy-l-arabinosyltransferaseBZ172_RS01665Not AvailablePositive323827 - 32547962584.9

Displaying genes 801 – 810 of 5262 in total

Pathways

16 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
ShigellosisCausesPMC2600399
ShigellosisCausesPMC5177732
Diarrheal diseaseCausesPMC5177732
ShigellosisCausesPMC6038740
ShigellosisCausesPMC2271788
ShigellosisCausesPMC5447701
Bacterial dysenteryCausesPMC5447701
DiarrheaCausesPMC8886675
DysenteryCausesPMC8886675
ShigellosisCausesPMC8886675

Displaying health effects 1 – 10 of 11 in total