Escherichia coli str. ZRUEC59

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain ZRUEC59 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of its host-associated habitat. As a facultative anaerobe, E. coli str. ZRUEC59 is capable of growth in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions within its host. The ability to survive in diverse oxygen conditions can aid in the organism's versatility and resilience in host environments, contributing to its presence in various biological niches associated with mammals. Understanding the specific traits of E. coli str. ZRUEC59 enhances our insight into its potential roles in microbial communities and its interactions with host organisms. This adaptability may play a significant role in nutrient cycling within host-associated ecosystems, highlighting the importance of E. coli strains in maintaining microbial diversity and functionality within their ecological frameworks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainZRUEC59

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. ZRUEC59
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain ZRUEC59 NODE_143_length_221_cov_82.2128,

Gene Summary

Adenine Count

1314101 bp

Thymine Count

1324371 bp

Guanine Count

1330283 bp

Cytosine Count

1365913 bp

Genome Length

5334668 bp

Protein-coding Genes

5013 genes

Non-Coding Genes

365 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putrescine aminotransferaseDM102_14565Not AvailablePositive2883030 - 288440949607.2
pp_02868DM102_14570Not AvailableNegative2884451 - 2884783Not Available
hypothetical proteinDM102_14575Not AvailablePositive2884890 - 28850726824.3
transcriptional regulator ebgrDM102_14580Not AvailablePositive2885002 - 288598536242.5
beta-galactosidase subunit alphaDM102_14585Not AvailablePositive2886169 - 2889261117801.0
beta-galactosidase subunit betaDM102_14590Not AvailablePositive2889258 - 288970717500.6
amino acid permeaseDM102_14595Not AvailablePositive2889770 - 289120352175.7
protein ygjjDM102_14600Not AvailablePositive2891337 - 289240740159.7
alpha-glucosidaseDM102_14605Not AvailablePositive2892424 - 289477588367.6
nadph-dependent 2,4-dienoyl-coa reductaseDM102_14610Not AvailablePositive2895001 - 289701972690.7

Displaying genes 3081 – 3090 of 5378 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total