Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | NUBRI-E |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290282 bp
Thymine Count
1291497 bp
Guanine Count
1342139 bp
Cytosine Count
1315095 bp
Genome Length
5239013 bp
Protein-coding Genes
4761 genes
Non-Coding Genes
392 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphodiesterase | E1729_24610 | Not Available | Positive | 4968504 - 4969328 | 30915.5 |
| abc transporter atp-binding protein | E1729_24615 | Not Available | Positive | 4969334 - 4970407 | 40165.6 |
| abc transporter substrate-binding protein | E1729_24620 | Not Available | Positive | 4970400 - 4971710 | 48290.9 |
| duf2726 domain-containing protein | E1729_24640 | Not Available | Positive | 4973777 - 4974160 | 15081.3 |
| replication regulatory protein repa | E1729_24645 | Not Available | Positive | 4974400 - 4974654 | 9438.51 |
| replication protein repa | E1729_24650 | Not Available | Negative | 4974698 - 4974811 | 4193.11 |
| repa leader peptide tap | E1729_24655 | Not Available | Positive | 4974892 - 4974966 | 2699.38 |
| incfii family plasmid replication initiator repa | E1729_24660 | Not Available | Positive | 4974959 - 4975816 | 32757.6 |
| hypothetical protein | E1729_24665 | Not Available | Positive | 4976179 - 4976565 | 14212.9 |
| cpbp family intramembrane metalloprotease | E1729_24670 | Not Available | Positive | 4976755 - 4977408 | 24308.9 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





