Escherichia coli str. NGE-022

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain NGE-022 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli NGE-022 is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, which further supports its versatility in various host-associated niches. The ability to thrive in host-associated habitats suggests that E. coli NGE-022 may play a role in the microbial community of its host, potentially contributing to processes such as digestion or nutrient cycling. Given its facultative anaerobic nature, this strain may also be capable of surviving in fluctuating oxygen levels, which can occur in different parts of the host's gastrointestinal tract. This adaptability might provide E. coli NGE-022 with a competitive advantage in colonizing diverse environments within the host, enhancing its ecological fitness in the microbial ecosystem. Further study of this strain could elucidate its specific functional interactions within the host microbiome.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNGE-022

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. NGE-022
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain NGE-022 NODE_134_length_214_cov_29.3333,

Gene Summary

Adenine Count

1251495 bp

Thymine Count

1254072 bp

Guanine Count

1280241 bp

Cytosine Count

1275789 bp

Genome Length

5061598 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hypothetical proteinDI389_12615Not AvailableNegative2465221 - 24654458263.8
Hypothetical proteinDI389_12620Not AvailableNegative2465445 - 246574711285.8
Hypothetical proteinDI389_12625Not AvailableNegative2465747 - 24659718308.9
Replication gene b proteinDI389_12630Not AvailableNegative2466035 - 246653519941.1
CoxDI389_12635Not AvailableNegative2466705 - 246697710459.7
C proteinDI389_12640Not AvailablePositive2467114 - 246740710583.8
Phage integraseDI389_12645Not AvailablePositive2467477 - 246845736987.0
AttrNot AvailableNot AvailablePositive2468594 - 2468620Not Available
periplasmic protein cpxpDI389_12650Not AvailableNegative2468644 - 246914418966.4
Putative dna-binding response regulatorDI389_12655Not AvailablePositive2469294 - 246999226313.7

Displaying genes 61 – 70 of 5022 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total