Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | HMPREF3040_00771 | Not Available | Negative | 739971 - 740603 | 23522.3 |
| Phage-related tail protein | HMPREF3040_02271 | Not Available | Negative | 2187409 - 2189558 | 78430.6 |
| hypothetical protein | HMPREF3040_02272 | Not Available | Negative | 2189539 - 2189880 | 13451.9 |
| Putative tail component | HMPREF3040_02273 | Not Available | Negative | 2189902 - 2190483 | 20211.4 |
| Putative tail fiber component | HMPREF3040_02274 | Not Available | Negative | 2190480 - 2191223 | 28264.4 |
| Putative tail protein | HMPREF3040_02275 | Not Available | Negative | 2191234 - 2191932 | 25758.3 |
| Putative minor tail protein | HMPREF3040_02276 | Not Available | Negative | 2191932 - 2192261 | 12627.3 |
| Tail component | HMPREF3040_02277 | Not Available | Negative | 2192258 - 2193514 | 45280.5 |
| Attl | Not Available | Not Available | Positive | 3414260 - 3414272 | Not Available |
| Integrase | HMPREF3040_03552 | Not Available | Negative | 3423715 - 3424878 | 45020.5 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





