Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-asparaginase | HMPREF3040_00696 | Not Available | Positive | 674263 - 675228 | 33490.1 |
| putative phosphonate c-p lyase system protein phnk | HMPREF3040_00697 | Not Available | Positive | 675215 - 677086 | 69124.3 |
| glutathione-binding protein gsib | HMPREF3040_00698 | Not Available | Positive | 677106 - 678644 | 56444.0 |
| glutathione abc transporter, permease protein gsic | HMPREF3040_00699 | Not Available | Positive | 678662 - 679582 | 34068.5 |
| putative d,d-dipeptide transport system permease protein ddpc | HMPREF3040_00700 | Not Available | Positive | 679699 - 680496 | 28325.2 |
| cyclic diguanylate phosphodiesterase domain protein | HMPREF3040_00701 | Not Available | Positive | 680674 - 683022 | 90082.9 |
| diguanylate cyclase domain protein | HMPREF3040_00702 | Not Available | Positive | 683030 - 684358 | 49865.8 |
| dna-binding helix-turn-helix protein | HMPREF3040_00703 | Not Available | Negative | 684428 - 684757 | 11982.8 |
| toxin-antitoxin system, toxin component, rele family | HMPREF3040_00704 | Not Available | Negative | 684747 - 685133 | 14294.2 |
| ribosomal protein s12 methylthiotransferase rimo | HMPREF3040_00705 | Not Available | Negative | 685359 - 686684 | 49584.6 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





