Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphonate c-p lyase system protein phnh | HMPREF3040_00616 | Not Available | Negative | 588796 - 589380 | 20960.5 |
| phosphonate c-p lyase system protein phng | HMPREF3040_00617 | Not Available | Negative | 589377 - 589829 | 16569.7 |
| phosphonate metabolism transcriptional regulator phnf | HMPREF3040_00618 | Not Available | Negative | 589830 - 590555 | 27653.2 |
| phosphonate abc transporter, permease protein phne | HMPREF3040_00619 | Not Available | Negative | 590576 - 591355 | 28399.3 |
| phosphonate abc transporter, periplasmic phosphonate binding protein | HMPREF3040_00620 | Not Available | Negative | 591416 - 592432 | 37300.5 |
| phosphonate abc transporter, atp-binding protein | HMPREF3040_00621 | Not Available | Negative | 592457 - 593245 | 29457.4 |
| protein phnb | HMPREF3040_00622 | Not Available | Negative | 593378 - 593821 | 16138.1 |
| putative alkylphosphonate utilization operon protein phna | HMPREF3040_00623 | Not Available | Negative | 593981 - 594394 | 15248.3 |
| hypothetical protein | HMPREF3040_00624 | Not Available | Positive | 594718 - 596946 | 84325.8 |
| hypothetical protein | HMPREF3040_00625 | Not Available | Positive | 596943 - 597821 | 32921.7 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





