Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitrite transporter nirc | HMPREF3040_00556 | Not Available | Negative | 534037 - 534843 | 28578.2 |
| nitrite reductase | HMPREF3040_00557 | Not Available | Negative | 534969 - 535295 | 12270.6 |
| nitrite reductase | HMPREF3040_00559 | Not Available | Negative | 535292 - 537565 | 82823.3 |
| hypothetical protein | HMPREF3040_00558 | Not Available | Positive | 537557 - 537964 | 15437.4 |
| transporter, major facilitator family protein | HMPREF3040_00560 | Not Available | Negative | 538097 - 539278 | 43197.0 |
| peptidyl-prolyl cis-trans isomerase cyp18 | HMPREF3040_00561 | Not Available | Positive | 539549 - 540121 | 20446.5 |
| putative toxin-antitoxin system, antitoxin component | HMPREF3040_00562 | Not Available | Positive | 540226 - 540393 | 6702.13 |
| toxin-antitoxin system, toxin component, fic family | HMPREF3040_00563 | Not Available | Positive | 540383 - 540985 | 22933.3 |
| para-aminobenzoate synthase glutamine amidotransferase component ii | HMPREF3040_00564 | Not Available | Positive | 541017 - 541580 | 20711.0 |
| succinylornithine transaminase | HMPREF3040_00565 | Not Available | Positive | 541666 - 542886 | 43787.4 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





