Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_00536 | Not Available | Positive | 516165 - 516569 | 15092.0 |
| type iv pilus secretin pilq | HMPREF3040_00537 | Not Available | Positive | 516559 - 517719 | 41918.2 |
| shikimate kinase | HMPREF3040_00538 | Not Available | Positive | 517964 - 518641 | 25299.1 |
| 3-dehydroquinate synthase | HMPREF3040_00539 | Not Available | Positive | 518698 - 519786 | 38856.3 |
| protein damx | HMPREF3040_00540 | Not Available | Positive | 519878 - 521164 | 46092.2 |
| dna adenine methylase | HMPREF3040_00541 | Not Available | Positive | 521271 - 522107 | 32101.2 |
| ribulose-phosphate 3-epimerase | HMPREF3040_00542 | Not Available | Positive | 522125 - 522802 | 24555.7 |
| phosphoglycolate phosphatase, bacterial | HMPREF3040_00543 | Not Available | Positive | 522795 - 523553 | 27375.7 |
| tryptophan--trna ligase | HMPREF3040_00544 | Not Available | Positive | 523546 - 524550 | 37439.9 |
| hypothetical protein | HMPREF3040_00545 | Not Available | Negative | 524558 - 524692 | 5361.77 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





