Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alternative sigma factor rpoh | HMPREF3040_00455 | Not Available | Positive | 429443 - 430297 | 32470.6 |
| leucine-specific-binding protein livk | HMPREF3040_00456 | Not Available | Positive | 430554 - 431672 | 39635.3 |
| hypothetical protein | HMPREF3040_00457 | Not Available | Negative | 431728 - 431862 | 4897.91 |
| acetyltransferase, gnat family | HMPREF3040_00458 | Not Available | Negative | 431872 - 432255 | 14512.4 |
| hypothetical protein | HMPREF3040_00459 | Not Available | Positive | 432390 - 432527 | 5382.59 |
| hypothetical protein | HMPREF3040_00460 | Not Available | Negative | 432506 - 432634 | 4807.22 |
| leucine-specific-binding protein livk | HMPREF3040_00461 | Not Available | Positive | 432679 - 433788 | 39362.9 |
| high-affinity branched-chain amino acid abc transporter, permease protein livh | HMPREF3040_00462 | Not Available | Positive | 433836 - 434762 | 32966.4 |
| branched-chain amino acid abc transporter, permease protein | HMPREF3040_00463 | Not Available | Positive | 434759 - 436036 | 46320.2 |
| abc transporter, atp-binding protein | HMPREF3040_00464 | Not Available | Positive | 436033 - 436800 | 28428.7 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





