Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_00394 | Not Available | Positive | 372977 - 373150 | 6539.07 |
| arginine repressor | HMPREF3040_00395 | Not Available | Positive | 373134 - 373604 | 16995.5 |
| hypothetical protein | HMPREF3040_00396 | Not Available | Positive | 373918 - 374232 | 11168.3 |
| hypothetical protein | HMPREF3040_00397 | Not Available | Negative | 374288 - 374560 | 10766.7 |
| p-hydroxybenzoic acid efflux pump subunit aaeb | HMPREF3040_00398 | Not Available | Negative | 374652 - 376619 | 73614.9 |
| efflux transporter, rnd family, mfp subunit | HMPREF3040_00399 | Not Available | Negative | 376625 - 377557 | 34693.4 |
| putative protein aaex | HMPREF3040_00400 | Not Available | Negative | 377565 - 377837 | 10291.8 |
| lysr substrate binding domain protein | HMPREF3040_00401 | Not Available | Positive | 377951 - 378880 | 34518.1 |
| tldd/pmba family protein | HMPREF3040_00402 | Not Available | Negative | 379008 - 380453 | 51367.2 |
| tigr02099 family protein | HMPREF3040_00403 | Not Available | Negative | 380609 - 384400 | 138644.0 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





