Escherichia coli str. JPH493

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain JPH493 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that coincides with the physiological temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli JPH493 can grow in both aerobic and anaerobic environments, allowing it to exploit various niches within its host's gastrointestinal tract. The ability to grow in diverse oxygen conditions suggests a metabolic flexibility that may enhance its survival and competitiveness in the complex microbial community typically residing in hosts. This characteristic is particularly relevant in the context of the gut microbiome, where fluctuating oxygen levels can occur. The rod shape and arrangement in pairs or singles may also contribute to its motility and colonization capabilities, facilitating interactions within its host environment. Overall, the traits of E. coli strain JPH493 underline its role as a versatile inhabitant of host-associated ecosystems, potentially contributing to the dynamic interactions that characterize microbial communities in health and disease. The strain exemplifies the adaptability of E. coli as a model organism in microbiological research, particularly in studies related to host-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainJPH493

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. JPH493
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain JPH493 E_coliHMPREF3040-1.0_Cont1024.2,

Gene Summary

Adenine Count

1295780 bp

Thymine Count

1293439 bp

Guanine Count

1334851 bp

Cytosine Count

1317027 bp

Genome Length

5241097 bp

Protein-coding Genes

5329 genes

Non-Coding Genes

292 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mannonate dehydrataseHMPREF3040_05535Not AvailablePositive5160891 - 516207544840.5
mannitol dehydrogenase domain proteinHMPREF3040_05536Not AvailablePositive5162156 - 516361653583.2
hypothetical proteinHMPREF3040_05538Not AvailableNegative5163638 - 51638326777.36
fcd domain proteinHMPREF3040_05537Not AvailablePositive5163831 - 516460429309.9
hypothetical proteinHMPREF3040_05539Not AvailableNegative5164745 - 516556930376.3
hypothetical proteinHMPREF3040_05540Not AvailablePositive5165909 - 51660525511.39
anti-adapter protein irad domain proteinHMPREF3040_05541Not AvailablePositive5166389 - 51666409750.53
lysr substrate binding domain proteinHMPREF3040_05542Not AvailableNegative5166633 - 516754434712.7
beta-aspartyl peptidaseHMPREF3040_05543Not AvailableNegative5167609 - 516878141086.3
transporter gate domain proteinHMPREF3040_05544Not AvailableNegative5168794 - 516925516194.5

Displaying genes 5541 – 5550 of 5621 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total