Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type 1 fimbriae regulatory protein fime | HMPREF3040_05525 | Not Available | Positive | 5151334 - 5151888 | 21468.6 |
| type-1 fimbrial protein, a chain | HMPREF3040_05526 | Not Available | Positive | 5152370 - 5152918 | 18112.2 |
| fimbrial protein | HMPREF3040_05527 | Not Available | Positive | 5152983 - 5153522 | 19374.4 |
| gram-negative pili assembly chaperone domain protein | HMPREF3040_05528 | Not Available | Positive | 5153559 - 5154284 | 26660.5 |
| outer membrane usher protein fimd | HMPREF3040_05529 | Not Available | Positive | 5154417 - 5156987 | 93675.3 |
| protein fimf | HMPREF3040_05530 | Not Available | Positive | 5156997 - 5157527 | 18716.3 |
| protein fimg | HMPREF3040_05531 | Not Available | Positive | 5157534 - 5158043 | 17576.7 |
| protein fimh | HMPREF3040_05532 | Not Available | Positive | 5158054 - 5158965 | 31818.7 |
| high-affinity gluconate transporter | HMPREF3040_05533 | Not Available | Negative | 5159208 - 5160551 | 47141.0 |
| hypothetical protein | HMPREF3040_05534 | Not Available | Positive | 5160631 - 5160939 | 11764.4 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





