Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr substrate binding domain protein | HMPREF3040_05394 | Not Available | Positive | 5064674 - 5065558 | 33374.4 |
| hypothetical protein | HMPREF3040_05395 | Not Available | Positive | 5065664 - 5065867 | 7660.44 |
| hypothetical protein | HMPREF3040_05396 | Not Available | Positive | 5066134 - 5066349 | 8205.09 |
| Trna-thr | Not Available | Not Available | Positive | 5066477 - 5066552 | Not Available |
| glutamate-5-semialdehyde dehydrogenase | HMPREF3040_05398 | Not Available | Negative | 5066667 - 5067920 | 44620.6 |
| glutamate 5-kinase | HMPREF3040_05399 | Not Available | Negative | 5067932 - 5069122 | 42544.2 |
| outer membrane protein | HMPREF3040_05400 | Not Available | Positive | 5069317 - 5070378 | 39227.4 |
| sigma factor-binding protein crl | HMPREF3040_05401 | Not Available | Negative | 5070417 - 5070818 | 15614.6 |
| hypothetical protein | HMPREF3040_05402 | Not Available | Negative | 5070876 - 5072120 | 47039.4 |
| xanthine phosphoribosyltransferase | HMPREF3040_05403 | Not Available | Negative | 5072212 - 5072670 | 16971.6 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





