Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_05364 | Not Available | Negative | 5043663 - 5044055 | 14680.6 |
| putative plasmid segregation protein parm | HMPREF3040_05365 | Not Available | Negative | 5044060 - 5045031 | 35656.5 |
| hypothetical protein | HMPREF3040_05366 | Not Available | Positive | 5045260 - 5045904 | 23518.2 |
| hypothetical protein | HMPREF3040_05367 | Not Available | Positive | 5045898 - 5046173 | 10060.2 |
| site-specific recombinase, phage integrase family | HMPREF3040_05368 | Not Available | Negative | 5046311 - 5047120 | 29853.3 |
| toxin-antitoxin system, toxin component, mazf family | HMPREF3040_05369 | Not Available | Negative | 5047121 - 5047426 | 11693.2 |
| protein ccda | HMPREF3040_05370 | Not Available | Negative | 5047428 - 5047646 | 8372.8 |
| hypothetical protein | HMPREF3040_05371 | Not Available | Positive | 5048284 - 5048511 | 8191.65 |
| hypothetical protein | HMPREF3040_05372 | Not Available | Positive | 5048838 - 5049005 | 6483.76 |
| hypothetical protein | HMPREF3040_05373 | Not Available | Negative | 5049147 - 5049275 | 4934.92 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





