Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anaerobic dimethyl sulfoxide reductase chain a | HMPREF3040_05354 | Not Available | Negative | 5034110 - 5036536 | 89561.7 |
| hypothetical protein | HMPREF3040_05355 | Not Available | Negative | 5036735 - 5037082 | 12153.5 |
| hypothetical protein | HMPREF3040_05356 | Not Available | Positive | 5037112 - 5037858 | 27913.0 |
| diamine n-acetyltransferase | HMPREF3040_05357 | Not Available | Negative | 5037861 - 5038421 | 21902.3 |
| hypothetical protein | HMPREF3040_05358 | Not Available | Negative | 5038456 - 5038797 | 12943.4 |
| hypothetical protein | HMPREF3040_05359 | Not Available | Positive | 5038932 - 5039258 | 11876.1 |
| starvation-sensing protein rspa | HMPREF3040_05360 | Not Available | Positive | 5039431 - 5040678 | 47337.6 |
| putative chlorophyll synthesis pathway protein bchc | HMPREF3040_05361 | Not Available | Positive | 5040666 - 5041709 | 37493.4 |
| putative lambdoid prophage qin defective integrase | HMPREF3040_05362 | Not Available | Negative | 5041897 - 5043192 | 49016.1 |
| excisionase family protein | HMPREF3040_05363 | Not Available | Negative | 5043212 - 5043463 | 9742.79 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





