Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr substrate binding domain protein | HMPREF3040_05344 | Not Available | Positive | 5025014 - 5025907 | 33275.4 |
| protein mlc | HMPREF3040_05345 | Not Available | Positive | 5026042 - 5027262 | 44276.7 |
| dethiobiotin synthase | HMPREF3040_05346 | Not Available | Positive | 5027387 - 5028082 | 24968.4 |
| voltage-gated clc-type chloride channel clcb | HMPREF3040_05347 | Not Available | Negative | 5028035 - 5029291 | 44264.2 |
| hypothetical protein | HMPREF3040_05348 | Not Available | Positive | 5029336 - 5029482 | 5642.97 |
| twin-arginine leader-binding protein dmsd | HMPREF3040_05349 | Not Available | Negative | 5029485 - 5030108 | 23689.3 |
| dmso reductase, anchor subunit dmsc | HMPREF3040_05350 | Not Available | Negative | 5030142 - 5030996 | 30477.5 |
| anaerobic dimethyl sulfoxide reductase chain b domain protein | HMPREF3040_05351 | Not Available | Negative | 5030998 - 5031249 | 9005.82 |
| hypothetical protein | HMPREF3040_05352 | Not Available | Negative | 5031246 - 5031602 | 12816.3 |
| anaerobic dimethyl sulfoxide reductase chain a | HMPREF3040_05353 | Not Available | Negative | 5031626 - 5034052 | 90133.2 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





