Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane porin, oprd family | HMPREF3040_05324 | Not Available | Positive | 5001936 - 5003201 | 46590.2 |
| hypothetical protein | HMPREF3040_05325 | Not Available | Negative | 5003246 - 5004754 | 54703.2 |
| mannose-6-phosphate isomerase, class i | HMPREF3040_05326 | Not Available | Negative | 5004855 - 5006030 | 42856.3 |
| fumarate hydratase class i | HMPREF3040_05327 | Not Available | Positive | 5006229 - 5007875 | 60302.0 |
| fumarate hydratase, class ii | HMPREF3040_05328 | Not Available | Positive | 5008018 - 5009421 | 50482.9 |
| dna replicatio site-binding protein | HMPREF3040_05329 | Not Available | Negative | 5009418 - 5010347 | 35774.1 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | HMPREF3040_05330 | Not Available | Negative | 5010423 - 5011724 | 49257.7 |
| transcriptional regulatory protein rsta | HMPREF3040_05331 | Not Available | Negative | 5011728 - 5012447 | 26705.4 |
| glpm protein | HMPREF3040_05332 | Not Available | Positive | 5012576 - 5012911 | 12295.8 |
| dihydrofolate reductase folm | HMPREF3040_05333 | Not Available | Negative | 5012908 - 5013630 | 26395.9 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





