Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative thiosulfate reductase electron transport protein phsb | HMPREF3040_05264 | Not Available | Positive | 4943776 - 4944495 | 26913.1 |
| nickel-dependent hydrogenase b-type cytochrome subunit | HMPREF3040_05265 | Not Available | Positive | 4944492 - 4945277 | 29504.5 |
| hypothetical protein | HMPREF3040_05266 | Not Available | Positive | 4945281 - 4946093 | 29316.3 |
| hypothetical protein | HMPREF3040_05267 | Not Available | Negative | 4946105 - 4947709 | 60758.5 |
| putative mono-oxygenase ydhr | HMPREF3040_05268 | Not Available | Negative | 4947835 - 4948140 | 11317.5 |
| Trna-val | Not Available | Not Available | Positive | 4948248 - 4948324 | Not Available |
| Trna-val | Not Available | Not Available | Positive | 4948329 - 4948405 | Not Available |
| hypothetical protein | HMPREF3040_05271 | Not Available | Positive | 4948714 - 4949970 | 42825.6 |
| multidrug resistance protein mdtk | HMPREF3040_05272 | Not Available | Negative | 4950011 - 4951384 | 49434.2 |
| riboflavin synthase, alpha subunit | HMPREF3040_05273 | Not Available | Positive | 4951599 - 4952240 | 23446.3 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





