Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_05038 | Not Available | Positive | 4740069 - 4740254 | 6852.26 |
| hypothetical protein | HMPREF3040_05039 | Not Available | Negative | 4740258 - 4740416 | 5955.07 |
| transposase | HMPREF3040_05040 | Not Available | Positive | 4740688 - 4741092 | 15225.4 |
| element, orf2 protein, is66 family | HMPREF3040_05041 | Not Available | Positive | 4741089 - 4741436 | 12797.9 |
| hypothetical protein | HMPREF3040_05042 | Not Available | Positive | 4741485 - 4741609 | 4844.76 |
| type iv conjugative transfer system protein trav | HMPREF3040_05043 | Not Available | Negative | 4741610 - 4742049 | 15472.6 |
| hypothetical protein | HMPREF3040_05044 | Not Available | Negative | 4742039 - 4742548 | 19100.0 |
| hypothetical protein | HMPREF3040_05045 | Not Available | Negative | 4742541 - 4742713 | 5741.16 |
| trap protein | HMPREF3040_05046 | Not Available | Negative | 4742789 - 4743046 | 9745.62 |
| type-f conjugative transfer system pilin acetylase trax | HMPREF3040_05047 | Not Available | Positive | 4743047 - 4743760 | 26106.2 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





