Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is66 family element, transposase | HMPREF3040_05008 | Not Available | Negative | 4709792 - 4710244 | 17157.4 |
| hypothetical protein | HMPREF3040_05009 | Not Available | Negative | 4710245 - 4710882 | 24492.4 |
| element, orf2 protein, is66 family | HMPREF3040_05010 | Not Available | Negative | 4710913 - 4711263 | 13170.2 |
| transposase | HMPREF3040_05011 | Not Available | Negative | 4711260 - 4711685 | 15868.2 |
| hypothetical protein | HMPREF3040_05012 | Not Available | Positive | 4711713 - 4711916 | 7450.06 |
| hypothetical protein | HMPREF3040_05013 | Not Available | Positive | 4711891 - 4712154 | 9272.27 |
| n-acetylneuraminate lyase | HMPREF3040_05014 | Not Available | Positive | 4712347 - 4713264 | 34100.3 |
| putative n-acetylmannosamine kinase | HMPREF3040_05015 | Not Available | Positive | 4713298 - 4714173 | 30745.3 |
| putative sialic acid transporter | HMPREF3040_05016 | Not Available | Positive | 4714222 - 4715694 | 53871.0 |
| hypothetical protein | HMPREF3040_05017 | Not Available | Positive | 4715698 - 4716528 | 31220.0 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





