Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | HMPREF3040_03563 | Not Available | Negative | 3429813 - 3430286 | 18258.0 |
| Repressor protein | HMPREF3040_03564 | Not Available | Negative | 3430368 - 3431123 | 28165.8 |
| Helix-turn-helix domain-containing protein | HMPREF3040_03565 | Not Available | Positive | 3431162 - 3431392 | 8150.94 |
| Cii decision making protein | HMPREF3040_03566 | Not Available | Positive | 3431462 - 3432001 | 20198.3 |
| Replication protein o | HMPREF3040_03567 | Not Available | Positive | 3431998 - 3433017 | 37574.9 |
| Putative replication protein p | HMPREF3040_03568 | Not Available | Positive | 3433014 - 3433715 | 26544.0 |
| Ren protein | HMPREF3040_03569 | Not Available | Positive | 3433712 - 3434014 | 11027.5 |
| hypothetical protein | HMPREF3040_03570 | Not Available | Positive | 3434144 - 3434266 | 4506.64 |
| Putative regulatory protein | HMPREF3040_03571 | Not Available | Negative | 3434263 - 3435765 | 58816.9 |
| hypothetical protein | HMPREF3040_03572 | Not Available | Positive | 3436141 - 3436314 | 6484.27 |
Pathways
12929 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





