Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv secretion/conjugal transfer atpase, virb4 family | HMPREF3040_04948 | Not Available | Positive | 4657731 - 4660088 | 88336.6 |
| hypothetical protein | HMPREF3040_04949 | Not Available | Positive | 4660120 - 4660254 | 4738.75 |
| virb8 protein | HMPREF3040_04950 | Not Available | Positive | 4660254 - 4660988 | 28218.9 |
| putative p-type conjugative transfer protein virb9 | HMPREF3040_04951 | Not Available | Positive | 4660985 - 4661755 | 29109.6 |
| bacterial conjugation trbi-like protein | HMPREF3040_04952 | Not Available | Positive | 4661745 - 4662884 | 41219.2 |
| p-type dna transfer atpase virb11 | HMPREF3040_04953 | Not Available | Positive | 4662978 - 4663958 | 36895.4 |
| trag/trad family protein | HMPREF3040_04954 | Not Available | Positive | 4663974 - 4665932 | 73352.0 |
| type ivb pilus formation outer membrane protein, r64 piln family | HMPREF3040_04955 | Not Available | Positive | 4665983 - 4667626 | 58024.9 |
| pilin accessory protein pilo | HMPREF3040_04956 | Not Available | Positive | 4667665 - 4668987 | 49822.3 |
| type iv pilus biogenesis protein pilp | HMPREF3040_04957 | Not Available | Positive | 4668971 - 4669465 | 17634.2 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





