Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative protein sirb1 | HMPREF3040_04839 | Not Available | Positive | 4576444 - 4577253 | 30843.1 |
| 3-deoxy-8-phosphooctulonate synthase | HMPREF3040_04840 | Not Available | Positive | 4577289 - 4578143 | 30834.5 |
| bacteriophage lambda tail assembly protein i | HMPREF3040_04841 | Not Available | Negative | 4578336 - 4578908 | 19461.5 |
| nlpc/p60 family protein | HMPREF3040_04842 | Not Available | Negative | 4578905 - 4579561 | 25203.7 |
| protein psib domain protein | HMPREF3040_04843 | Not Available | Negative | 4579562 - 4579761 | 7725.0 |
| hypothetical protein | HMPREF3040_04844 | Not Available | Negative | 4579830 - 4580345 | 18845.1 |
| lyts/yhck-type transmembrane receptor domain protein | HMPREF3040_04845 | Not Available | Positive | 4580346 - 4582094 | 64569.5 |
| putative protein mrke | HMPREF3040_04846 | Not Available | Positive | 4582091 - 4582843 | 29380.4 |
| transcriptional regulator, arac family | HMPREF3040_04847 | Not Available | Positive | 4582856 - 4583713 | 32432.5 |
| phosphoenolpyruvate-protein phosphotransferase | HMPREF3040_04848 | Not Available | Negative | 4583716 - 4586211 | 92163.3 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





