Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminoacyl-trna hydrolase | HMPREF3040_04829 | Not Available | Negative | 4567054 - 4567638 | 21099.6 |
| hypothetical protein | HMPREF3040_04830 | Not Available | Positive | 4567916 - 4568194 | 10486.9 |
| sulfate permease | HMPREF3040_04831 | Not Available | Negative | 4568249 - 4569901 | 58406.6 |
| ribose-phosphate diphosphokinase | HMPREF3040_04832 | Not Available | Negative | 4570053 - 4571018 | 34871.2 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | HMPREF3040_04833 | Not Available | Negative | 4571151 - 4572002 | 30956.2 |
| outer membrane lipoprotein lolb | HMPREF3040_04834 | Not Available | Negative | 4572002 - 4572625 | 23552.1 |
| glutamyl-trna reductase | HMPREF3040_04835 | Not Available | Positive | 4572839 - 4574095 | 46309.5 |
| peptide chain release factor 1 | HMPREF3040_04836 | Not Available | Positive | 4574136 - 4575218 | 40519.6 |
| protein-(glutamine-n5) methyltransferase | HMPREF3040_04837 | Not Available | Positive | 4575218 - 4576051 | 30937.6 |
| invasion expression up-regulator, sirb | HMPREF3040_04838 | Not Available | Positive | 4576048 - 4576440 | 14665.8 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





