Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha,alpha-trehalase | HMPREF3040_04819 | Not Available | Negative | 4554729 - 4556345 | 60844.3 |
| hypothetical protein | HMPREF3040_04820 | Not Available | Positive | 4556371 - 4556586 | 7819.46 |
| dihydroxyacetone kinase, phosphotransfer subunit | HMPREF3040_04821 | Not Available | Negative | 4556745 - 4558163 | 51515.7 |
| dihydroxyacetone kinase, l subunit | HMPREF3040_04822 | Not Available | Negative | 4558174 - 4558806 | 22589.0 |
| dihydroxyacetone kinase, dhak subunit | HMPREF3040_04823 | Not Available | Negative | 4558817 - 4559887 | 38211.4 |
| pts-dependent dihydroxyacetone kinase operon regulatory protein, dhar | HMPREF3040_04824 | Not Available | Positive | 4560106 - 4562034 | 70950.4 |
| outer membrane autotransporter barrel domain protein | HMPREF3040_04825 | Not Available | Negative | 4562134 - 4565001 | 99872.8 |
| hypothetical protein | HMPREF3040_04826 | Not Available | Negative | 4565025 - 4565159 | 5269.58 |
| hypothetical protein | HMPREF3040_04827 | Not Available | Positive | 4565346 - 4565600 | 9987.64 |
| gtp-binding protein ychf | HMPREF3040_04828 | Not Available | Negative | 4565846 - 4566937 | 39669.6 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





