Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fatty acid metabolism transcriptional regulator fadr | HMPREF3040_04799 | Not Available | Positive | 4535983 - 4536702 | 26970.2 |
| spovr family protein | HMPREF3040_04800 | Not Available | Negative | 4536753 - 4538285 | 60803.1 |
| d-amino acid dehydrogenase small subunit | HMPREF3040_04801 | Not Available | Positive | 4538615 - 4539913 | 47610.1 |
| alanine racemase | HMPREF3040_04802 | Not Available | Positive | 4539923 - 4540993 | 38872.9 |
| leucine rich repeat-containing domain protein | HMPREF3040_04803 | Not Available | Negative | 4541161 - 4542597 | 55192.9 |
| hypothetical protein | HMPREF3040_04804 | Not Available | Positive | 4542858 - 4542992 | 4744.96 |
| hypothetical protein | HMPREF3040_04805 | Not Available | Positive | 4542962 - 4543144 | 6760.28 |
| potassium/proton antiporter | HMPREF3040_04807 | Not Available | Negative | 4543246 - 4544856 | 57832.5 |
| hypothetical protein | HMPREF3040_04806 | Not Available | Positive | 4544855 - 4545019 | 6199.09 |
| muramoyltetrapeptide carboxypeptidase | HMPREF3040_04808 | Not Available | Negative | 4545077 - 4545991 | 33518.4 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





