Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor kinase dpib | HMPREF3040_04698 | Not Available | Negative | 4448781 - 4450439 | 61611.6 |
| [citrate (pro-3s)-lyase] ligase | HMPREF3040_04699 | Not Available | Positive | 4450819 - 4451877 | 40035.4 |
| citrate lyase acyl carrier protein | HMPREF3040_04700 | Not Available | Positive | 4451892 - 4452188 | 10689.9 |
| citrate (pro-3s)-lyase, beta subunit | HMPREF3040_04701 | Not Available | Positive | 4452185 - 4453093 | 33123.7 |
| citrate lyase, alpha subunit | HMPREF3040_04702 | Not Available | Positive | 4453104 - 4454636 | 55242.1 |
| holo-acp synthase citx | HMPREF3040_04703 | Not Available | Positive | 4454640 - 4455191 | 20271.5 |
| triphosphoribosyl-dephospho-coa synthase citg | HMPREF3040_04704 | Not Available | Positive | 4455172 - 4456044 | 31432.1 |
| citrate carrier | HMPREF3040_04705 | Not Available | Positive | 4456094 - 4457557 | 53095.7 |
| ribonuclease, t2 family | HMPREF3040_04706 | Not Available | Positive | 4457671 - 4458477 | 29591.0 |
| hypothetical protein | HMPREF3040_04707 | Not Available | Positive | 4458571 - 4458732 | 6112.27 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





