Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_04688 | Not Available | Positive | 4442226 - 4442387 | 6178.57 |
| lipoyl synthase | HMPREF3040_04689 | Not Available | Positive | 4442457 - 4443422 | 36073.8 |
| twin arginine translocase protein e | HMPREF3040_04690 | Not Available | Negative | 4443523 - 4443726 | 7024.71 |
| hydrolase, carbon-nitrogen family | HMPREF3040_04691 | Not Available | Negative | 4443855 - 4444643 | 28664.0 |
| protein crcb | HMPREF3040_04692 | Not Available | Positive | 4444805 - 4445119 | 11347.0 |
| cold shock-like protein cspe | HMPREF3040_04693 | Not Available | Negative | 4445173 - 4445382 | 7463.84 |
| antimicrobial peptide resistance and lipid a acylation protein pagp | HMPREF3040_04694 | Not Available | Negative | 4445557 - 4446117 | 21716.5 |
| hypothetical protein | HMPREF3040_04695 | Not Available | Positive | 4446603 - 4446722 | 4589.67 |
| anaerobic c4-dicarboxylate transporter dcuc | HMPREF3040_04696 | Not Available | Positive | 4446706 - 4448091 | 48415.3 |
| transcriptional regulatory protein dpia | HMPREF3040_04697 | Not Available | Negative | 4448132 - 4448812 | 25466.9 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





