Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavodoxin | HMPREF3040_04627 | Not Available | Positive | 4392314 - 4392844 | 19737.9 |
| hypothetical protein | HMPREF3040_04628 | Not Available | Negative | 4392878 - 4393006 | 4992.23 |
| ferric uptake regulation protein | HMPREF3040_04629 | Not Available | Positive | 4393133 - 4393579 | 16795.8 |
| hypothetical protein | HMPREF3040_04630 | Not Available | Negative | 4393664 - 4393990 | 12017.3 |
| outer membrane porin, oprd family | HMPREF3040_04631 | Not Available | Negative | 4394040 - 4395446 | 52748.8 |
| hypothetical protein | HMPREF3040_04632 | Not Available | Positive | 4395705 - 4395863 | 6407.0 |
| glutamine--trna ligase | HMPREF3040_04633 | Not Available | Negative | 4395894 - 4397558 | 63525.4 |
| pts system, n-acetylglucosamine-specific iibc component | HMPREF3040_04634 | Not Available | Negative | 4397761 - 4399707 | 68391.9 |
| hypothetical protein | HMPREF3040_04635 | Not Available | Positive | 4399866 - 4399991 | 4696.67 |
| glucosamine-6-phosphate deaminase | HMPREF3040_04636 | Not Available | Positive | 4400040 - 4400840 | 29775.9 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





